Workflows
What is a Workflow?Filters
CWL + RO-Crate Workflow Descriptions
This repository stores computational workflows described using the Common Workflow Language (CWL) and enriched with metadata using Research Object Crate (RO-Crate) conforming to the Workflow Run RO-Crate profile.
Each workflow is contained in its own directory (e.g., WF5201
, WF6101
, ...). Inside each workflow directory you will typically find at least:
- The CWL workflow definition (with the same name as the directory, e.g.,
WF5201.cwl
). ...
CWL + RO-Crate Workflow Descriptions
This repository stores computational workflows described using the Common Workflow Language (CWL) and enriched with metadata using Research Object Crate (RO-Crate) conforming to the Workflow Run RO-Crate profile.
Each workflow is contained in its own directory (e.g., WF5201
, WF6101
, ...). Inside each workflow directory you will typically find at least:
- The CWL workflow definition (with the same name as the directory, e.g.,
WF5201.cwl
). ...
Workflow to download and prepare TCGA data.
The workflow divides the process of generating Gene Regulatory networks from TCGA cancer data in three steps:
- Downloading the raw data from GDC and saving the rds/tables needed later
- Preparing the data. This step includes filtering the data, normalizing it...
- Analysis of gene regulatory networks
This workflow demonstrates the integration of FAIR principles into the workflow management ecosystem through provenance integration in Autosubmit, a workflow manager developed at the Barcelona Supercomputing Center (BSC), and SUNSET (SUbseasoNal to decadal climate forecast post-processing and aSSEssmenT suite), an R-based verification workflow also developed at BSC.
Autosubmit supports the generation of data provenance information based on RO-Crate, facilitating the creation of machine-actionable ...
This workflow creates taxonomic summary tables for a specified taxonomic rank out of MAPseq's OTU tables output collection.
Application that perform the multiplication between matrices.