Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
MultiQC26
SAMtools23
fastp21
BWA19
Bowtie 212
Minimap211
Cutadapt10
FastQC10
BLAST9
BCFtools8
BEDTools7
MaBoSS7
PhysiCell7
SRA Software Toolkit7
lofreq6
MACS6
R5
snpEff5
Stacks5
antiSMASH4
Bandage4
BUSCO4
Bwa-mem24
Cufflinks4
Galaxy4
kraken24
Racon4
Seurat4
shovill4
taxonomy_krona_chart4
TransDecoder4
Unicycler4
UniProt4
cisTEM3
GenomeScope 2.03
gffread3
Gromacs3
iVar3
MotionCor23
picard_samtofastq3
QualiMap3
QUAST3
RepeatMasker3
Scipion3
SPAdes3
STAR3
Vcflib3
Variant Effect Predictor (VEP)3
AmberTools2
BRAKER12
bx-python2
CellProfiler2
ChiRA2
DESeq22
Flye2
FreeBayes2
funannotate2
GATK2
HISAT22
Infernal2
Medaka2
NanoPlot2
nanopolish2
NGSUtils2
Open Babel2
PredPrIn2
purge_dups2
RDKit2
RepeatModeler2
seqtk2
SnpSift2
StringTie2
tophat22
Trimmomatic2
VADR2
vardict2
VarScan2
vcfanno2
vcfutils2
VSEARCH2
XMIPP2
AdapterRemoval1
BBMap1
Bioconductor1
Biopython1
CARNIVAL1
cBioPortal1
ChemicalToolbox1
Clustal 1.8 (Clustal W, Clustal X)1
cuffdiff1
decoupleR1
Delly21
EGA1
Filtlong1
FLASH1
GEMINI1
HiFiAdapterFilt1
htseqcount1
iqtree1
MAPseq1
Merqury1
Meryl1
miniasm1
MOB-suite1
Metagenomic operational taxonomic units (mOTUs)1
nextstrain.org1
ngsReports1
OBITools1
PEAR1
PhysiBoSS1
pilon1
PLINK1
PretextView1
progeny1
Proteinortho1
protexcluder1
SeqCode1
SeqSero21
SISTR1
Subread1
SuCOS1
Trim Galore1
varlociraptor1
YaHS1
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Workflow type
Galaxy230
Common Workflow Language64
Nextflow52
COMPSs41
Snakemake35
Python32
Jupyter28
Shell Script11
Workflow Description Language8
KNIME6
Bpipe5
Scipion5
R markdown3
Autosubmit1
Janis1
Perl1
Pi1
Quarto Markdown1
Rbbt1
Uniform Interface to Computing Resources1
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Tag
covid-1945
Bioinformatics32
Genomics26
Assembly23
Nextflow22
Metagenomics21
PyCOMPSs18
CWL17
Transcriptomics17
workflow17
Alignment15
Galaxy15
SNPs15
Annotation13
INDELs13
RNASEQ13
rna-seq12
variant_calling12
vgp12
ERGA11
GATK411
Marenostrum IV11
Python11
rna11
variant calling11
Example10
image processing10
Supercomputer10
Tutorial10
cancer9
Large-genome-assembly9
Machine Learning9
covid19.galaxyproject.org8
dislib8
HiFi8
illumina8
imaging8
ONT8
scRNAseq8
COMPSs7
SARS-CoV-27
scalable7
Climate6
molecular dynamics6
PBS6
Reviewed6
Snakemake6
Virology6
bpipe5
genome-annotation5
groovy5
GTN5
Laptop5
Metabolomics5
NCI5
pediatric5
VGP_curated5
WGS5
Workflows5
ARTIC4
BY-COVID4
ChIP4
copernicus4
FAIR workflows4
FASTQ4
Gadi4
generic4
helicase4
Hi-C4
HPC4
Java4
jupyter4
name:ASSEMBLY+QC4
name:ONT4
nanopore4
phylogenetics4
Proteomics4
rare diseases4
Retrosynthesis4
rna virus4
SAMTools4
Virus4
antimicrobial resistance3
Assembly+QC3
binning3
BWA3
Classification3
cryoem3
DataQC3
Default-SDR3
DNA3
Ecology3
EOSC4Cancer3
genome_assembly3
Germline3
gpu3
hifiasm3
identification3
kraken3
manta3
mapping3
MetaDEGalaxy3
mirna prediction3
name:ILLUMINA3
NCI-Gadi3
OME-Zarr3
Pathway Analysis3
pathway prediction3
protein3
QC3
S33
SANBI3
scipion3
scRNA-seq3
spa3
STAR3
structural variants3
16S2
Alternative splicing2
Amplicon2
astronomy2
bash2
bioimaging2
blast2
BROAD2
BUSCO2
BWA-mem2
CellProfiler2
Cheminformatics2
ChIP-seq2
CODEX22
collections2
Conversion2
coronavirus2
cosifer2
Deep learning2
dengue2
DE_NOVO2
differential expression2
DNA-seq2
Electron microscopy2
Epigenomics2
ExomeDepth2
exploration2
expression2
FastQC2
Flashlite2
gene set enrichment analysis2
genome2
Genome assembly2
GROMACS2
GWAS2
HySEA2
iwc2
kallisto2
linkage_map2
mass-spectrometry2
Matrix Multiplication2
Merqury2
MERS2
Meryl2
metabolic engineering2
metatranscriptomics2
mpxv2
MS2
Multi-omics2
multi-specimen-input2
MultiQC2
name:ERGA2
nf-core2
NSP132
pathway design2
personalized medicine2
phylogenomics2
Pipeline2
Quast2
Semantic Network Analysis2
shotgun2
singularity2
Somatic2
Synthetic Biology2
Tophat22
TransBioNet2
trinity2
Tsunami2
validated-2022-06-292
variant-analysis2
VARSCAN22
VCF2
WDL2
west nile2
workflow4metabolomics2
zika2
#single-cell1
10.3390/microorganisms100202921
10X1
18S1
ABR1
abricate1
air-quality1
alternative-splicing1
AMR1
AMR-detection1
annotsv1
ATACseq1
automated workflows1
BackTrackBB1
bacterial-genomics1
BAM1
BBduk1
bbmap1
Behavioral data1
benchmarking1
BGE1
BioBB1
Biodiversity1
bioformats1
bioformats2raw1
Bioimage1
Biomedical Ontologies1
BioStudies1
Bootstrapping1
bowtie21
BQSR1
braken1
carveme1
CATH1
causal inference1
Cellranger1
CIRCexplorer21
circrna1
circRNA_finder1
CIRIquant1
cmip61
common data model1
community-detection1
Community_metrics1
comparative effectiveness1
Compomics1
container1
counts1
CUTnRUN1
Darwin core1
data annotation1
data fusion1
data integration1
Data package1
data retrieval and transformation1
data transformation1
data wrangling1
Databases1
DataOne1
DCC1
DE1
de novo1
DIAMOND1
differential_expression1
directed acyclic graph1
disease outcome prediction1
DL1
Domain-Domain interaction1
dRNAseq1
durg response simulation1
earth observation1
Earthquake Detection1
Ecological metadata language1
eDNA1
eFlows4HPC1
emergen_validated1
EML1
eml-annotation1
eosc-nordic1
EZyRB1
FAIR1
fastp1
featurecounts1
file conversion1
filtering1
find_circ1
Galaxy-E1
GATK1
GATK31
GC-MS1
GEM1
gene expression correlation1
gene expression data wrangling1
Gene ontology term sets similarity1
Gene Prioritization1
genetic design1
genomic ancestry1
geo database mining1
GLM1
global assemblies1
gnps1
Gravitational Waves1
GRIDS1
GRIDSS1
GUCFG2galaxy1
GUI1
HaplotyeCaller1
hCNV1
HiC1
high-throughput1
high-throughput_sequencing_analysis1
hmdb1
host-pathogen PPIs1
HTSeq1
human1
humann21
Hybrid Workflow1
image file format1
imageJ1
index1
international comparison1
isoform switching1
ITS1
Juicer1
kmeans1
Knime1
Kratos Multiphysics1
LC-MS1
LiftOver1
Luigi & Rufus workflow1
MAG1
map1
MapSplice1
MARS-seq1
massbank1
MaxQuant1
memote1
Metabarcoding1
metagenome1
metaMS1
MGE1
microbial1
microscopy1
MIRACUM1
miRanda1
mlxv1
Mobilome1
model1
Modeling1
mpvx1
Multivariate1
Mutect21
name:amplicon1
name:PROFILING1
name:single-cell1
ncbi sra1
NCI Gadi1
ndvi1
networks1
NGFF1
NGS1
non-coding1
non-model1
Non-parametric1
nonspliced1
Nord 31
NS31
observation1
OME-TIFF1
openebench1
paired-end1
pangenome1
pangeo1
parallel1
Parsl1
pathogenicity score1
Pathway co-occurrence1
Perl1
Permeability1
Pfam1
polygenic risk score1
polygenic score1
pox1
prediction1
Presence_absence1
Profiling1
prokka1
Proline1
Protein domains1
protein interactin data triplification1
protein interactions database integration1
Protein-Protein Interaction1
Protein-Protein interaction prediction1
proteins network augmentation1
public cancer datasets exploration1
purge_dups1
QTL mapping1
quality1
quantification1
radio interferometry1
rdkit1
reads_selection1
reads_simulation1
Reconstruction1
Reduced Order Modeling1
referencegenome1
Regulatory Mendelian Mutation score1
RELIANCE1
ReMM1
Report1
rice1
RSeQC1
salmon1
sambamba1
scientific publication text mining1
Segemehl1
Segmentation1
Seismic Detection1
Semantic Comparison1
Semantic Interpretation1
sentinel-2 data1
sequence annotation1
sequence search1
SIM1
single particle analysis1
single-end1
SKA1
smart-seq 21
smoove1
snv1
SPARK1
Species abundance1
spectra1
Statistics1
strandedness1
StringTie1
Supernova1
survivor1
SV1
SVD1
synthetic data1
TAD1
TargetScan1
tcga1
TELLSeq1
tiddit1
Tomography1
topologically associating domains1
Toxicology1
trajectories1
Trans-Proteomic1
transcriptome1
tumour1
Unicycler1
urgent computing1
vaccines1
validaiton o protein interaction predictions1
variant1
variant pathogenicity prediction1
variation1
whole genome sequencing1
xcms1
More...
Submitter
Genís Bayarri56
WorkflowHub Bot49
Raül Sirvent22
Bert Droesbeke16
Anna Syme16
Laura Rodriguez-Navas14
Sarah Williams14
Diego De Panis12
Yvan Le Bras11
Ambarish Kumar10
Tracy Chew9
Cristóbal Gallardo9
Anne Fouilloux8
Bart Nijsse8
Jean-Marie Burel8
Miguel Vazquez8
Paul De Geest8
Douglas Lowe7
Cristian Tatu7
Yasmmin Martins7
Johan Gustafsson6
Georgina Samaha6
Jasper Koehorst5
Sergi Sayols5
Oliver Woolland5
Tom Brown5
Matthieu Muffato5
Melchior du Lac4
Martin Beracochea4
Willem de Koning4
johan Rollin4
Helena Rasche4
Dennis Dollée4
Konstantinos Kyritsis4
Bryan Raubenolt4
Stian Soiland-Reyes3
Peter van Heusden3
Irene Sánchez3
Juma Bayjan3
Mike Thang3
Wolfgang Maier3
Anton Nekrutenko3
Jeanette Reinshagen3
Varsha Kale3
Pablo Riesgo Ferreiro3
Daniel Marchan3
Oliver White3
Hervé Ménager2
Luca Pireddu2
Robin Long2
Beatriz Serrano-Solano2
Phil Ewels2
Pavankumar Videm2
Ross Thorne2
Sarah Beecroft2
Valentine Murigneux2
Volodymyr Savchenko2
Johannes Köster2
thodk2
Elida Schneltzer2
Pasi Korhonen2
Miguel Roncoroni2
Kary Ocaña2
Cristiane Taniguti2
Peter Menzel2
Adam Tofilski2
Tina Tian2
Daan Hazelaar2
Andrea Furlani2
Fabrice Touzain2
Jorge Ejarque2
Nathaniel Matteson2
Fernando Vázquez-Novoa2
francois moreews1
Camille Juigné1
Laura del Cano1
Ivan Topolsky1
ignacio eguinoa1
Andrea Giachetti1
Michael R. Crusoe1
Matteo Chiara1
Carlos Oscar Sorzano Sanchez1
Paul Brack1
phytopat gembloux1
johan Rollin1
Marco De La Pierre1
Julian Uszkoreit1
Qinqin Long1
Dennis Hendriksen1
Daphne Wijnbergen1
Patrick Durand1
Cyril Noel1
Richard Lupat1
Javier Moldon1
Bianca Pasat1
Rob Edwards1
Valentin Tilloy1
Michael Roach1
Ryan Patterson-Cross1
Alexander Botzki1
Barry Digby1
panou@fleming.gr Panou1
Haris Zafeiropoulos1
Kaur Alasoo1
Hrishikesh Dhondge1
Marvin Martens1
Marlene Rezk1
Naga Kasinadhuni1
Casper de Visser1
Samuel Lambert1
Ekaterina Sakharova1
Alejandra Escobar1
Saskia Hiltemann1
bugra oezdemir1
Max Schubach1
Luc Cornet1
Felicita Gernhardt1
Nico Trummer1
Ang Guo1
Diego Garrido-Martín1
Roderic Guigó1
Bruno P. Kinoshita1
Luca Cozzuto1
Xiaokang Zhang1
Zavolan Lab1
Mahnoor Zulfiqar1
Stevie Pederson1
Jeffrey Detras1
Thomas Gruber1
Marjan Meurisse1
Khaled Jum'ah1
Jorrit Mesman1
Elisabetta Spinazzola1
Rosa M Badia1
Anand Maurya1
Agata Kilar1
Vincent Hervé1
Markus Konkol1
Jessica Gomez-Garrido1
Akshay Akshay1
Davide Gurnari1
David Yuan1
Justin Sonneck1
Yi Sun1
Rutger Vos1
Bram Danneels1
Zafran Hussain Shah1
Magdalena Antczak1
Kateřina Storchmannová1
Michael Hall1
Rafael Terra1
Ziad Al-Bkhetan1
Ashish Bhawel1
More...
Team
BioBB Building Blocks66
iwc49
Australian BioCommons36
Workflows and Distributed Computing25
GalaxyProject SARS-CoV-221
Galaxy Australia21
QCIF Bioinformatics18
ERGA Assembly16
Sydney Informatics Hub15
usegalaxy-eu14
UNLOCK13
PNDB11
Galaxy Training Network10
EuroScienceGateway9
COMPSs Tutorials9
MGnify8
Galaxy Climate8
OME8
PerMedCoE8
IBISBA Workflows7
HoloFood at MGnify7
yPublish - Bioinfo tools7
CWL workflow SARS-CoV-26
Integrated and Urban Plant Pathology Laboratory6
IMBforge5
UX trial team5
iPC: individualizedPaediatricCure5
Specimen Data Refinery5
Cluster Emergent del Cervell Humà5
eFlows4HPC general5
NanoGalaxy4
EJPRD WP13 case-studies workflows4
Seq4AMR4
Biodata Analysis Group4
Biodiversity Genomics Europe (general)4
Tree of Life Genome Analysis4
Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4
nf-core3
SARS-CoV-2 Data Hubs3
CO2MICS Lab3
EU-Openscreen3
TRON gGmbH3
Euro-BioImaging3
SANBI Pathogen Bioinformatics3
Scipion CNB3
NHM Clark group3
nf-core viralrecon2
V-Pipe2
EOSC-Life - Demonstrator 7: Rare Diseases2
Pawsey Supercomputing Research Centre2
SeBiMER2
Snakemake-Workflows2
ODA2
Applied Computational Biology at IEG/HMGU2
INFRAFRONTIER workflows2
TransBioNet2
CRC Cohort2
Workflows Australia2
usegalaxy.be workflows2
Air Quality Prediction2
Read2Map2
ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2
Apis-wings2
Workflows for geographic science2
Katdetectr2
ANSES-Ploufragan2
Pillar III: Urgent computing for natural hazards2
ERGA Annotation2
CholGen2
BY-COVID (general)2
Peter Menzel's Team2
NMR Workflow1
COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1
Italy-Covid-data-Portal1
EOSC-Life-WP6-Demos1
EOSC-Life WP31
Genomics Coordination Center1
Janis1
IAA-CSIC1
FAME1
CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1
HecatombDevelopment1
OpenEBench1
Bioinformatics and Biostatistics (BIO2 ) Core1
VIB Bioinformatics Core1
Single Cell Unit1
emo-bon1
CINECA1
Toxicology community1
Gyn Department1
Medizinisches Proteom-Center, Medical Bioinformatics1
AGRF BIO1
X-omics1
CAPSID1
KircherLab1
BCCM_ULC1
Computational Science at HZDR1
Big data in biomedicine1
TRE-FX1
Guigó lab1
Statistical genetics1
Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1
Bioinformatics Unit @ CRG1
BSC-CES1
ELIXIR Proteomics1
Black Ochre Data Labs1
IRRI Bioinformatics Group1
Zavolan Lab1
Metabolomics-Reproducibility1
NGFF Tools1
Bioinformatics workflows for life science1
Helmholtz Scientific Project Workflow Platform1
BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection1
Lake Erken modelling setup1
EOSC-Life WP3 OC Team, cross RI project1
ARA-dev1
Mendel Centre for Plant Genomics and Proteomics1
Metagenomic tools1
Pillar I: Manufacturing1
Polygenic Score Catalog1
MLme: Machine Learning Made Easy1
Dioscuri TDA1
MMV-Lab1
Tree of Life Genome Assembly1
EMBL-CBA1
EBP-Nor1
Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1
Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)1
Chemical Data Lab1
Pangenome database project1
HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1
Building spatio-temporal workflows in Galaxy1
More...
Space
Independent Teams230
BioExcel66
Australian BioCommons62
eFlows4HPC35
COVID-19 Biohackathon31
ERGA18
Galaxy10
HoloFood7
DISSCo - Distributed System of Scientific Collections5
Sanger Tree of Life5
Biodiversity Genomics Europe (BGE)4
nf-core3
EOSC-Life3
BeYond-COVID (BY-COVID)3
ELIXIR Belgium2
EOSC-Life-WP61
JKU 1
IRRI-Bioinformatics1
HELIPORT1
Coupled Catchment Lake Modelling1
AquaINFRA1
More...
Creator
Adam Hospital62
Genís Bayarri61
Anna Syme16
Bart Nijsse13
Tracy Chew13
Jasper Koehorst12
Diego De Panis12
Yvan Le Bras10
Laura Rodriguez-Navas9
Rosemarie Sadsad9
Georgina Samaha9
Jean-Marie Burel8
Saskia Hiltemann7
Cristian Tatu7
Martin Beracochea6
Douglas Lowe6
José Mª Fernández6
Delphine Lariviere6
Javier Conejero6
Coline Royaux5
Sergi Sayols5
Melchior du Lac4
Gareth Price4
Oliver Woolland4
Cali Willet4
Jorge Ejarque4
Bryan Raubenolt4
Ambarish Kumar3
Juma Bayjan3
Friederike Ehrhart3
Ozan Ozisik3
Patrick Durand3
Laura Leroi3
Laurence Livermore3
Germán Royval3
Cristóbal Gallardo3
Cenna Doornbos3
Jeanette Reinshagen3
Tom Brown3
Konstantinos Kyritsis3
Ivan Topolsky2
Luca Pireddu2
Anne Fouilloux2
Michael R. Crusoe2
Pavankumar Videm2
Valentine Murigneux2
Alexandre Cormier2
Cyril Noel2
Pierre Cuzin2
Mike Thang2
Philipp Gormanns2
Kary Ocaña2
Varsha Kale2
Ekaterina Sakharova2
Cristiane Taniguti2
Peter Menzel2
Diego Garrido-Martín2
Roderic Guigó2
Andrea Furlani2
Ziad Al-Bkhetan2
Stian Soiland-Reyes1
Camille Juigné1
Willem de Koning1
Pau Andrio1
Johan Gustafsson1
Matthias Haimel1
Carlos Oscar Sorzano Sanchez1
Paul Brack1
Sarah Beecroft1
Marco De La Pierre1
Julian Uszkoreit1
Helena Rasche1
Richard Lupat1
Volodymyr Savchenko1
Johannes Köster1
Valentin Tilloy1
Michael Roach1
Elida Schneltzer1
Luiz Gadelha1
Asier Gonzalez-Uriarte1
Wolfgang Maier1
Woosub Shin1
Ryan Patterson-Cross1
Anthony Bretaudeau1
Barry Digby1
Haris Zafeiropoulos1
Hrishikesh Dhondge1
Kim Philipp Jablonski1
Pasi Korhonen1
Marvin Martens1
Tazro Inutano1
Marlene Rezk1
Casper de Visser1
Jasper Ouwerkerk1
Benjamin Wingfield1
Anna Niehues1
Marie-Dominique Devignes1
Samuel Lambert1
Alejandra Escobar1
Katherine Farquharson1
Lucas Cruz1
Pablo Riesgo Ferreiro1
Felicita Gernhardt1
Andrey Prjibelski1
Xiaokang Zhang1
Zavolan Lab1
Mahnoor Zulfiqar1
Stevie Pederson1
Veit Schwämmle1
Anton Korobeynikov1
Luiz Gadelha1
Vasiliki Panagi1
Jorrit Mesman1
Elisabetta Spinazzola1
Rosa M Badia1
Agata Kilar1
Jessica Gomez-Garrido1
Sagane Joye-Dind1
Akshay Akshay1
Phuong Doan1
Davide Gurnari1
David Yuan1
Justin Sonneck1
Zafran Hussain Shah1
Denys Savchenko1
Fernando Vázquez-Novoa1
Nandan Deshpande1
Michael Hall1
Rafael Terra1
Ian Brennan1
More...
Collection
BioCommons ‘Bring Your Own Data’ Expansion Project39
Interactive Jupyter Notebooks for FAIR and reproducible biomolecular simulation workflows17
Tutorials for BioExcel Building Blocks (BioBB)11
Workflows in EuroScienceGateway10
scRNAseq processing in galaxy8
COMPSs Workflows from 2024 Tutorial8
Freely accessible ready to use global infrastructure and workflows for SARS-CoV-2 monitoring6
IDR6
ERGA Assembly Galaxy HiFi & HiC Pipelines (Hifiasm-HiC + Purge_Dups + YaHS)6
16S Microbial Analysis with mothur (on Galaxy Australia)6
ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (NextDenovo-HyPo + Purge_Dups + YaHS)6
ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (Flye-HyPo + Purge_Dups + YaHS)6
BioExcel Building Blocks (BioBB) Protein MD Setup Tutorials5
HiFi genome assembly on Galaxy4
Vertebrate Genomes Pipelines (VGP) workflows3
CEITEC CryoEM Facility Workflows3
ERGA Assembly Snakemake HiFi & HiC Pipelines3
TronFlow2
Sanger Tree of Life Assembly method1
More...
Topic annotations
Whole genome sequencing23
Bioinformatics22
Sequence assembly20
Genetic variation15
Genomics9
Population genomics9
Biodiversity8
Biomedical science8
Computer science8
Ecology8
Metagenomics8
Transcriptomics6
Biological databases4
Gene transcripts4
Metagenomic sequencing4
Sequence analysis4
Bioimaging3
Compound libraries and screening3
Drug discovery3
Imaging3
Oncology3
Preclinical and clinical studies3
Protein interactions3
Sample collections3
Sequencing3
Virology3
Workflows3
Data integration and warehousing2
Data mining2
Data quality management2
DNA mutation2
DNA polymorphism2
Exome sequencing2
Gene expression2
Gene structure2
Genetics2
Machine learning2
Protein interaction experiment2
Quantitative genetics2
Rare diseases2
ChIP-seq1
Copy number variation1
Data submission, annotation and curation1
Data visualisation1
DNA packaging1
Environmental science1
Epigenomics1
Human genetics1
Mapping1
Medical imaging1
Medical informatics1
Metabolomics1
Metatranscriptomics1
Microbiology1
Molecular genetics1
Molecular interactions, pathways and networks1
Ontology and terminology1
Phylogenetics1
Phylogenomics1
Protein folds and structural domains1
Proteomics1
Structural genomics1
Structural variation1
Taxonomy1
More...
Operation annotations
Sequencing quality control15
Variant calling12
Genome assembly11
Sequence assembly7
Variant filtering7
Sequence clustering6
Sequence alignment5
De-novo assembly4
Annotation3
Data retrieval3
Haplotype mapping3
Protein interaction network analysis3
Sequence assembly validation3
Transcriptome assembly3
Variant classification3
Conversion2
Gene-set enrichment analysis2
Genetic mapping2
Indel detection2
Modelling and simulation2
Prediction and recognition2
Protein interaction network prediction2
Scaffolding2
SNP annotation2
SNP detection2
Analysis1
Antimicrobial resistance prediction1
Calculation1
Clustering1
Copy number variation detection1
Correlation1
Data handling1
Differential gene expression profiling1
Dimensionality reduction1
DNA barcoding1
Enrichment analysis1
Expression analysis1
Expression correlation analysis1
Format detection1
Gene expression profiling1
Genome analysis1
Genome comparison1
Genome visualisation1
ID mapping1
Image analysis1
Mapping1
Metabolic pathway prediction1
Named-entity and concept recognition1
Network analysis1
Phasing1
Protein-protein interaction analysis1
Relation extraction1
RNA-Seq analysis1
Sequence assembly visualisation1
Sequence contamination filtering1
Sequence cutting1
Sequence trimming1
Taxonomic classification1
Text annotation1
Text mining1
Transcription factor binding site prediction1
Validation1
Visualisation1
Weighted correlation network analysis1
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Lysozyme in water sample COMPSs application
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Cluster Comparison COMPSs application
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Cholesky factorisation COMPSs application
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K-means COMPSs application
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Wordcount reduce version COMPSs application
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Wordcount merge version COMPSs application
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Lysozyme in water full COMPSs application, using dataset_small
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Lysozyme in water full COMPSs application, using dataset_small
Cancer Invasion Workflow
Table of Contents
Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment
Introduction
Phylogeny refers to the evolutionary history and relationship between biological lineages related by common descent. Reticulate evolution refers to the origination of lineages through the complete or partial merging of ancestor lineages. Networks may be used to represent lineage independence events in non-treelike phylogenetic processes.
The methodology for reconstructing networks ...