Workflows
What is a Workflow?Filters
Calculating and visualizing marine biodiversity indicators
Finding potential muon stopping sites in crystalline copper
Type: Galaxy
Creators: Leandro Liborio, Muon Spectroscopy Computational Project
Submitter: Paul De Geest
From Copernicus Sentinel 5P data to panoply visualization of volcanic activity impact to atmosphere
Functional annotation of protein sequences
Structural and functional genome annotation with Funannotate
Masking repeats in a genome using RepeatMasker
Assemble long reads with Flye, then view assembly statistics and assembly graph
Name: Random Forest Contact Person: support-compss@bsc.es Access Level: public License Agreement: Apache2 Platform: COMPSs Machine: MareNostrum4 This is an example of Random Forest algorithm from dislib. To show the usage, the code generates a synthetical input matrix. The results are printed by screen. This application used dislib-0.9.0
EBP-Nor Genome Assembly pipeline
This repository contains the EBP-Nor genome assembly pipeline. This pipeline is implemented in snakemake. This pipeline is developed to create haplotype-resolved genome assemblies from PacBio HiFi reads and HiC reads, and is primarly designed for diploid eukaryotic organisms. The pipeline is designed to work on a linux cluster with slurm as workload manager.
Requirements & Setup
Some software need to be configured/installed before the pipeline can be run ...