Workflows

What is a Workflow?
536 Workflows visible to you, out of a total of 577
Work-in-progress

Protype demonstrator of a workflow reducing HESS and INTEGRAL/SPI-ACS data to common Light Curve format and combining the lightcurves into a multi-wavelength observation.

Work-in-progress

ONTViSc (ONT-based Viral Screening for Biosecurity)

Introduction

eresearchqut/ontvisc is a Nextflow-based bioinformatics pipeline designed to help diagnostics of viruses and viroid pathogens for biosecurity. It takes fastq files generated from either amplicon or whole-genome sequencing using Oxford Nanopore Technologies as input.

The pipeline can either: 1) perform a direct search on the sequenced reads, 2) generate clusters, 3) assemble the reads to generate longer contigs or 4) directly ...

Type: Nextflow

Creators: Marie-Emilie Gauthier, Craig Windell, Magdalena Antczak, Roberto Barrero

Submitter: Magdalena Antczak

DOI: 10.48546/workflowhub.workflow.683.1

Refining Genome Annotations with Apollo

Type: Galaxy

Creator: Anthony Bretaudeau

Submitter: Paul De Geest

NDVI data with OpenEO to time series visualisation with HoloViz

Type: Galaxy

Creator: Marie Jossé

Submitter: Paul De Geest

Calculating and visualizing marine biodiversity indicators

Type: Galaxy

Creator: Marie Josse

Submitter: Paul De Geest

Finding potential muon stopping sites in crystalline copper

Type: Galaxy

Creators: Leandro Liborio, Muon Spectroscopy Computational Project

Submitter: Paul De Geest

From Copernicus Sentinel 5P data to panoply visualization of volcanic activity impact to atmosphere

Type: Galaxy

Creator: Marie Jossé

Submitter: Paul De Geest

Functional annotation of protein sequences

Type: Galaxy

Creator: Anthony Bretaudeau

Submitter: Paul De Geest

Structural and functional genome annotation with Funannotate

Type: Galaxy

Creator: Anthony Bretaudeau

Submitter: Paul De Geest

Masking repeats in a genome using RepeatMasker

Type: Galaxy

Creator: Anthony Bretaudeau

Submitter: Paul De Geest

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