Workflows
What is a Workflow?Filters
Tests This workflow creates taxonomic summary tables for a specified taxonomic rank out of MAPseq's OTU tables output collection.
The MAPseq to Ampvis workflow processes MAPseq OTU tables and associated metadata for analysis in Ampvis2. This workflow involves reformatting MAPseq output datasets to produce structured output files suitable for Ampvis2.
MGnify's amplicon pipeline v5.0. Including the Quality control for single-end and paired-end reads, rRNA-prediction, and ITS sub-WFs.
Type: Galaxy
Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute
Submitter: WorkflowHub Bot
Classification and visualization of ITS regions.
Type: Galaxy
Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute
Submitter: WorkflowHub Bot
Quality control subworkflow for paired-end reads.
Type: Galaxy
Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute
Submitter: WorkflowHub Bot
Quality control subworkflow for single-end reads.
Classification and visualization of SSU, LSU sequences.
Type: Galaxy
Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute
Submitter: WorkflowHub Bot
This workflow creates taxonomic summary tables out of the amplicon pipeline results.
This workflow uses eggNOG mapper and InterProScan for functional annotation of protein sequences.
This workflow performs subtyping and consensus sequence generation for batches of Illumina PE sequenced Influenza A isolates.
