Workflows
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Query
Created At
Updated At
Tool
MultiQC21
SAMtools16
fastp13
gfastats9
BEDTools7
BWA7
lofreq7
Bowtie 26
BUSCO6
Cutadapt6
Minimap26
Compleasm5
ggplot25
kraken25
QualiMap5
snpEff5
ToolDistillator5
Bandage4
BCFtools4
GenomeScope 2.04
MACS4
Merqury4
BamTools3
Bracken3
FastQC3
FASTX-Toolkit3
gffread3
Gromacs3
Open Babel3
Recentrifuge3
taxonomy_krona_chart3
AmberTools2
anndata2
biomformat2
bx-python2
CheckM2
Cufflinks2
JBrowse2
MAPseq2
MaxQuant2
Medaka2
Meryl2
PRINSEQ2
purge_dups2
QUAST2
RDKit2
seqtk2
STAR2
StringTie2
Trimmomatic2
Workflow4Metabolomics2
xcms2
ABRicate1
ampvis1
iVar1
Bakta1
Binette1
BLAST1
Bwa-mem21
ChemicalToolbox1
Clair31
Clustal 2 (Clustal W, Clustal X)1
cmsearch-deoverlap1
compute_sequence_length1
CONCOCT1
CoverM1
dastool1
DeepTools1
DESeq21
dRep1
edgeR1
eggNOG-mapper v21
FastTree1
FEELnc1
Flye1
FreeBayes1
GOseq1
GTDB-Tk1
Helixer1
Infernal1
Integron Finder1
InterProScan (EBI)1
iqtree1
ISEScan1
iVar1
KrakenTools1
MAFFT1
MAKER1
MaxBin1
MEGAHIT1
MetaBAT 21
MetaNovo1
metaspades1
MFAssignR1
msConvert1
MSstats1
NanoPlot1
NCBI fcs1
Newick Utilities1
OMArk1
PlasmidFinder1
SCANPY1
SemiBin1
SeqCode1
shovill1
snipit1
SRA Software Toolkit1
SuCOS1
Unipept1
UniProt1
VAPOR1
Vcflib1
More...
Workflow type
Galaxy111
Tag
Virology5
ABRomics4
bacterial-genomics4
Genomics4
covid-193
covid19.galaxyproject.org3
ARTIC2
ChIP-seq2
fasta2
FASTQ2
Metabolomics2
paired-end2
quality2
RNASEQ2
AMR1
AMR-detection1
Annotation1
antibiotic-resistance1
antimicrobial resistance1
antimicrobial-resistance-genes1
Assembly1
ATACseq1
BY-COVID1
ChIP1
CUTnRUN1
emergen_validated1
generic1
genome-annotation1
Hi-C1
mpxv1
name:amplicon1
name:single-cell1
ONT1
pox1
Reviewed1
single-cell1
taxonomy-assignment1
trimming1
vgp1
More...
Submitter
WorkflowHub Bot111
Creator
Paul Zierep11
Wolfgang Maier10
Romane Libouban7
Bérénice Batut4
Delphine Lariviere3
Clea Siguret3
Peter van Heusden2
Anthony Bretaudeau2
Pierre Marin2
Saim Momin2
Hugo Lefeuvre2
Pavankumar Videm1
Anton Nekrutenko1
Wendi Bacon1
More...
Collection
Freely accessible ready to use global infrastructure and workflows for SARS-CoV-2 monitoring6
BY-COVID related workflows6
Workflows in EuroScienceGateway5
Vertebrate Genomes Pipelines (VGP) workflows1
Scientific disciplines
Computer Science107
111
Workflows visible to you, out of a total of 111
Tests Protein-ligand complex parameterization
Parameterizes an input protein (PDB) and ligand (SDF) file prior to molecular dynamics simulation with GROMACS.
This is a simple workflow intended for use as a subworkflow in more complex MD workflows. It is used as a subworkflow by the GROMACS MMGBSA and dcTMD workflows.
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