Wolfgang Maier
SEEK ID: https://workflowhub.eu/people/95
Location:
Germany
ORCID:
https://orcid.org/0000-0002-9464-6640
Joined: 21st Jan 2021
Expertise: Not specified
Tools: Not specified
Roles
Space Administrator
Their tagsRelated items
Workflows developed as part of the EOSC4Cancer project.
Teams: EOSC4Cancer
Web page: https://eosc4cancer.eu
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network
Web page: https://galaxyproject.org/
A general team for the EOSC4Cancer project.
Space: EOSC4Cancer
Public web page: https://eosc4cancer.eu
Build a consensus sequence from FILTER PASS variants with intrasample allele-frequency above a configurable consensus threshold. Hard-mask regions with low coverage (but not consensus variants within them) and ambiguous sites.
This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq
This workflow takes a VCF dataset of variants produced by any of the *-variant-calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.
