{bismark,bismark_hisat}/alignments/logs/*.txt
{bismark,bismark_hisat,bwameth}/{alignments,deduplicated}/*.{bam,bam.bai}
{bismark,bismark_hisat}/deduplicated/logs/*.txt
{bismark,bismark_hisat}/{reports,summary}/*.{html,txt}
bwameth/deduplicated/picard_metrics/*.txt
fastqc/*.html
fastqc/zips/*.zip
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/*.{log,json}
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_fastqc.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_general_stats.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_software_versions.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_sources.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_report.html
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_plots/{pdf,png,svg}/*.{pdf,png,svg}
pipeline_info/*.{html,json,txt,yml}
qualimap/**/qualimapReport.html
qualimap/**/css/*
qualimap/**/images_qualimapReport/*
qualimap/**/raw_data_qualimapReport/*
trimgalore/fastqc/*.html
trimgalore/fastqc/zips/*.zip
trimgalore/logs/*.txt
