name: bwameth_index
description: Performs indexing of c2t converted reference genome
keywords:
  - bwameth
  - 3-letter genome
  - index
  - methylseq
  - bisulphite
  - bisulfite
  - fasta
tools:
  - bwameth:
      description: |
        Fast and accurate alignment of BS-Seq reads
        using bwa-mem and a 3-letter genome.
      homepage: https://github.com/brentp/bwa-meth
      documentation: https://github.com/brentp/bwa-meth
      arxiv: arXiv:1401.1129
      licence: ["MIT"]
input:
  - fasta:
      type: file
      description: Input genome fasta file
output:
  - index:
      type: dir
      description: Directory containing bwameth genome index
      pattern: "index"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@phue"
