/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        Nextflow config file for running minimal tests
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        Defines input files and everything required to run a fast and simple pipeline test.

        Use as follows:
                nextflow run nf-core/bamtofastq -profile test_collate_fast,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name = 'Test collate fast profile'
    config_profile_description = 'Minimal test dataset to check pipeline function'

    // Limit resources so that this can run on GitHub Actions
    max_cpus = 2
    max_memory = '6.GB'
    max_time = '6.h'

    // Input data
    input = "https://raw.githubusercontent.com/nf-core/test-datasets/bamtofastq/samplesheet/test_bam_samplesheet.csv"

    // Genome references
    genome = null
    igenomes_ignore = true

    // Other parameters
    samtools_collate_fast = true
}
