/*
========================================================================================
    Nextflow config file for running minimal tests
========================================================================================
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/bcellmagic -profile test,<docker/singularity>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name        = 'Test profile'
    config_profile_description = 'Minimal test dataset to check pipeline function'

    // Limit resources so that this can run on GitHub Actions
    max_cpus   = 2
    max_memory = 6.GB
    max_time   = 6.h

    // Input data
    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/bcellmagic/testdata-bcr/Metadata_test.tsv'
    cprimers = 'https://raw.githubusercontent.com/nf-core/test-datasets/bcellmagic/testdata-bcr/C_primers.fasta'
    vprimers = 'https://raw.githubusercontent.com/nf-core/test-datasets/bcellmagic/testdata-bcr/V_primers.fasta'

    protocol = 'pcr_umi'
    cprimer_position = 'R1'
    index_file = true
    umi_length = 8
    umi_start = 6
    umi_position = 'R1'
    loci = 'ig'
}
