Research Object Crate for Convert formats - TSI

Note: Deprecated as of May 2025. The mRNA preprocessing previously performed by this workflow is now built into the Fgenesh annotation workflow (881) Version 4. This workflow is no longer needed in the TSI annotation pipeline. Please use workflow 881 Version 4 directly with TransDecoder CDS output from workflow 879 (Extract transcripts). --- This is part of a series of workflows to annotate a genome, tagged with `TSI-annotation`. These workflows are based on command-line code by Luke Silver, converted into Galaxy Australia workflows. The workflows can be run in this order: * Repeat masking * RNAseq QC and read trimming * Find transcripts * Combine transcripts * Extract transcripts * Convert formats * Fgenesh annotation **** About this workflow: * Inputs: transdecoder-peptides.fasta, transdecoder-nucleotides.fasta * Runs many steps to convert outputs into the formats required for Fgenesh - .pro, .dat and .cdna

Author

Anna Syme

License

GPL-3.0

Contents