Research Object Crate for ERGA ONT+Illumina Assembly+QC Flye+HyPo v2403 (WF2)

The workflow takes raw ONT reads and trimmed Illumina WGS paired reads collections, and the estimated genome size and Max depth (both calculated from WF1) to run Flye and subsequently polish the assembly with HyPo. It produces collapsed assemblies (unpolished and polished) and runs all the QC analyses (gfastats, BUSCO, and Merqury).

Author

Diego De Panis, ERGA

License

MIT

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