Research Object Crate for Indices builder from GBOL RDF (TTL)

Original URL: https://workflowhub.eu/workflows/75/ro_crate?version=1

Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index

Author
Bart Nijsse
License
CC0-1.0

Contents

Main Workflow: Indices builder from GBOL RDF (TTL)
Size: 4445 bytes
Main Workflow Diagram: workflow-75-f8d3db7af24d8ad8fceac69baf83f572a64abff2-diagram.svg
Size: 12388 bytes