Refining Genome Annotations with Apollo (prokaryotes) Version 1
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Run on usegalaxy.euRefining Genome Annotations with Apollo
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Amel_4.5_scaffolds.fa.gz | #Amel_4.5_scaffolds.fa.gz | n/a |
|
| amel_OGSv3.2.gff3.gz | #amel_OGSv3.2.gff3.gz | n/a |
|
| forager.bw | #forager.bw | n/a |
|
| forager_Amel4.5_accepted_hits.bam | #forager_Amel4.5_accepted_hits.bam | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Register Account | toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account/create_account/3.1 |
| 5 | List Organisms | toolshed.g2.bx.psu.edu/repos/gga/apollo_list_organism/list_organism/3.1 |
| 6 | JBrowse | toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1 |
| 7 | Create or Update Organism | toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5 |
| 8 | Annotate | toolshed.g2.bx.psu.edu/repos/gga/apollo_iframe/iframe/4.2.5 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
Version 1 (earliest) Created 14th Feb 2024 at 15:59 by Paul De Geest
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Created: 14th Feb 2024 at 15:59
Last updated: 15th Feb 2024 at 13:44
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EuroScienceGateway will leverage a distributed computing network across 13 European countries, accessible via 6 national, user-friendly web portals, facilitating access to compute and storage infrastructures across Europe as well as to data, tools, workflows and services that can be customized to suit researchers’ needs.EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research, contributing an innovative and customizable service for ...
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