# Research Object Crate for scRNAseq Single Sample Processing Cell Ranger

Original URL: https://workflowhub.eu/workflows/647/ro_crate?version=1

From the R1 and R2 fastq files of a single samples, make a scRNAseq counts matrix, and perform basic QC with scanpy. Then, do further processing by making a UMAP and clustering. Produces a processed AnnData Depreciated: use individual workflows insead for multiple samples

Author
License
  other-closed

## Contents

Main Workflow: scRNAseq Single Sample Processing Cell Ranger
Size: 108091 bytes