CEITEC layer 0 workflow Version 1
Download RO CrateThe simplest workflow among a collection of workflows intended to solve tasks up to CTF estimation.
Basic processing pipeline
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Import movies
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Movie alignment (recommended 2 GPUs)
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CTF estimation
Monitor acquisition
- Monitor summary protocol:
- Monitor basic parameters (item counts, drift, resolution, astigmatism, defocus, etc.)
- Raise alarms (mail setting available)
- Provides information of the basic steps (html report)
Version History
Version 2 (earliest) Created 4th Oct 2023 at 11:58 by Daniel Marchan
Dynamic template
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Creators and Submitter
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Created: 4th Oct 2023 at 11:58
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This document provides a detailed explanation of all the workflows, including their functionalities, problems they address, advantages, disadvantages, implementation requirements, and open points for future versions.
Creator: Daniel Marchan
Submitter: Daniel Marchan
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A set of generic and automatic workflows designed to:
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Run on-the-fly and unattended.
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Maintain robust stability for a wide range of samples.
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Covers steps from movies to CTF estimation (for the moment).
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Monitor the acquisition process and provide user feedback.
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Comprise three proposed workflows, each with an additional layer of complexity.
