<h3>Contents</h3>

<ul>
  <li><a href="{{ pathto('index') }}">Home</a></li>
  <li><a href="{{ pathto('getting-started') }}">Getting started</a></li>
  <li><a href="{{ pathto('how-to/index') }}">How-to guides</a></li>
  <li><a href="{{ pathto('reference/index') }}">Reference guides</a></li>
  <ul>
    <li><a href="{{ pathto('reference/params') }}">Workflow parameters</a></li>
  </ul>
  <li><a href="{{ pathto('explanation/index') }}">Explanations</a></li>
  <ul>
    <li><a href="{{ pathto('explanation/plink2') }}">Why not use plink2?</a></li>
    <li><a href="{{ pathto('explanation/match') }}">Match rate errors</a></li>    
    <li><a href="{{ pathto('explanation/geneticancestry') }}">Adjusting PGS with genetic ancestry</a></li>
    <li><a href="{{ pathto('explanation/output') }}">Outputs & report</a></li>
  </ul>
  <li><a href="{{ pathto('troubleshooting') }}">Troubleshooting</a></li>
  <li><a href="{{ pathto('glossary') }}">Glossary</a></li>
</ul>

<h3>About the project</h3>

<ul>
  <li><a href="https://github.com/PGScatalog/pgsc_calc/releases">Changelog</a></li>
  <li><a href="{{ pathto('license') }}">License</a></li>
</ul>

<h3>Useful links</h3>

<ul>
  <li><a href="https://www.PGSCatalog.org">PGS Catalog</a></li>
  <li><a href="https://github.com/pgscatalog/pgsc_calc">pgsc_calc Github</a></li>
  <ul>
      <li><a href="https://github.com/pgscatalog/pgsc_calc/issues">Issue tracker</a></li>
      <li><a href="https://github.com/PGScatalog/pgsc_calc/discussions">Discussion board</a></li>
  </ul>
  <li><a href="https://github.com/PGScatalog/pygscatalog">pgscatalog-utils GitHub</a></li>
</ul>

<hr>
<a href="{{ pathto('genindex') }}">Index</a>
<hr>
