<h3>Contents</h3>

<ul>
  <li><a href="{{ pathto('index') }}">Home</a></li>
  <li><a href="{{ pathto('getting-started') }}">Getting started</a></li>
  <li><a href="{{ pathto('how-to/index') }}">How-to guides</a></li>
  <li><a href="{{ pathto('reference/index') }}">Reference guide</a></li>
  <ul>
    <li><a href="{{ pathto('reference/params') }}">Input Parameters/Flags</a></li>
    <li><a href="{{ pathto('reference/input') }}">Samplesheet schema</a></li>
    <li><a href="{{ pathto('reference/containers') }}">Containers</a></li>
  </ul>
  <li><a href="{{ pathto('output') }}">Outputs & results</a></li>
  <li><a href="{{ pathto('troubleshooting') }}">Troubleshooting</a></li>
  <li><a href="{{ pathto('glossary') }}">Glossary</a></li>
</ul>

<h3>About the project</h3>

<ul>
  <li><a href="{{ pathto('changelog') }}">Changelog</a></li>
  <li><a href="{{ pathto('license') }}">License</a></li>
</ul>

<h3>Useful links</h3>

<ul>
  <li><a href="https://www.PGSCatalog.org">PGS Catalog</a></li>
  <li><a href="https://github.com/pgscatalog/pgsc_calc">pgsc_calc Github</a></li>
  <ul>
      <li><a href="https://github.com/pgscatalog/pgsc_calc/issues">Issue tracker</a></li>
  </ul>
  <li><a href="https://github.com/PGScatalog/pgscatalog_utils">pgscatalog_utils Github</a></li>
</ul>

<hr>
<a href="{{ pathto('genindex') }}">Index</a>
<hr>
