Research Object Crate for (Hybrid) Metagenomics workflow

### Workflow (hybrid) metagenomic assembly and binning + GEMs _Accepts both Illumina and Long reads (ONT/PacBio)_ - **Workflow Illumina Quality:** https://workflowhub.eu/workflows/336?version=1 - **Workflow LongRead Quality:** https://workflowhub.eu/workflows/337 - Kraken2 taxonomic classification of FASTQ reads - SPAdes/Flye (Assembly) - QUAST (Assembly quality report) **Workflow binnning** https://workflowhub.eu/workflows/64?version=11 (optional) - Metabat2/MaxBin2/SemiBin - DAS Tool - CheckM - BUSCO - GTDB-Tk **Workflow Genome-scale metabolic models** https://workflowhub.eu/workflows/372 (optional) - CarveMe (GEM generation) - MEMOTE (GEM test suite) - SMETANA (Species METabolic interaction ANAlysis) Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default **All tool CWL files and other workflows can be found here:**
https://gitlab.com/m-unlock/cwl
**How to setup and use an UNLOCK workflow:**
https://m-unlock.gitlab.io/docs/setup/setup.html

Author

Bart Nijsse, Jasper Koehorst

License

Apache-2.0

Contents