Research Object Crate for Diabetes related genes expressed in pancreas

# Summary This notebook shows how to integrate genomic and image data resources. This notebook looks at the question **Which diabetes related genes are expressed in the pancreas?** Steps: * Query humanmine.org, an integrated database of Homo sapiens genomic data using the intermine API to find the genes. * Using the list of found genes, search in the Image Data Resource (IDR) for images linked to the genes, tissue and disease. * We use the [intermine Python API](https://github.com/intermine/intermine-ws-python) and the IDR Python API. The notebook can be opened in [Colab](https://colab.research.google.com/github/IDR/idr-notebooks/blob/master/humanmine.ipynb) # Inputs Parameters needed to configure the workflow: * TISSUE = "Pancreas" * DISEASE = "diabetes" # Ouputs * List of genes found using [HumanMine](https://pubmed.ncbi.nlm.nih.gov/35820040/) * List of images from IDR for one of the gene found

Author

Jean-Marie Burel

License

BSD-2-Clause

Contents