Research Object Crate for Diabetes related genes expressed in pancreas

# Summary This notebook shows how to integrate genomic and image data resources. This notebook looks at the question **Which diabetes related genes are expressed in the pancreas?** Steps: * Query humanmine.org, an integrated database of Homo sapiens genomic data using the intermine API to find the genes. * Using the list of found genes, search in the Image Data Resource (IDR) for images linked to the genes, tissue and disease. * We use the intermine API and the IDR API The notebook can be launched in [My Binder](https://mybinder.org/v2/gh/IDR/idr-notebooks/master?urlpath=notebooks%2Fhumanmine.ipynb) # Inputs Parameters needed to configure the workflow: * TISSUE = "Pancreas" * DISEASE = "diabetes" # Ouputs * List of genes found using HumanMine * List of images from IDR for one of the gene found

Author

Jean-Marie Burel

License

BSD-2-Clause

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