Introduction to DH in Galaxy
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Run on Galaxy22_04_30: WF Update
The workflow serves as a short introduction to Galaxy for users from the Humanities who mostly work with texts.
Associated Tutorial
This workflows is part of the tutorial Introduction to Digital Humanities in Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Daniela Schneider
Tutorial Author(s): Daniela Schneider, Rand Zoabi
Tutorial Contributor(s): Björn Grüning, Rand Zoabi, Daniela Schneider, Saskia Hiltemann
Funder(s): German Competence Center Cloud Technologies for Data Management and Processing, Ministry of Science, Research and Arts, German Network for Bioinformatics Infrastructure Service, Training, Cooperations & Cloud Computing
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input Text one | #main/Input Text one | Upload a text as a .txt file that you want to compare to another text. |
|
| Input Text two | #main/Input Text two | Upload a second text as a .txt file that you want to compare to the first text. |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Remove Hyperlink Poem One | Remove beginning1 |
| 3 | Remove Hyperlink Poem Two | Remove beginning1 |
| 4 | Remove Punctuation Poem One | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy3 |
| 5 | Break Poem One into sentences | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.5+galaxy3 |
| 6 | Remove Punctuation Poem Two | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy3 |
| 7 | Break Poem Two into sentences | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.5+galaxy3 |
| 8 | Generate the first WordCloud | toolshed.g2.bx.psu.edu/repos/bgruening/wordcloud/wordcloud/1.9.6+galaxy0 |
| 9 | Replace Space with linebreak Poem One | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy3 |
| 10 | Extract Specific Sentences from Poem One | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.5+galaxy3 |
| 11 | Replace Space with linebreak Poem Two | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy3 |
| 12 | Generate a second WordCloud | toolshed.g2.bx.psu.edu/repos/bgruening/wordcloud/wordcloud/1.9.6+galaxy0 |
| 13 | Extract Specific Sentences from Poem Two | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.5+galaxy3 |
| 14 | Compare the texts | toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.10+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| WordCloud01 | #main/WordCloud01 | n/a |
|
| WordCloud02 | #main/WordCloud02 | n/a |
|
| html_file | #main/html_file | n/a |
|
| output01 | #main/output01 | n/a |
|
| output02 | #main/output02 | n/a |
|
Version History
master
2.0
Creators and Submitter
Views: 2099 Downloads: 385 Runs: 5
Created: 15th Sep 2025 at 14:12
Last updated: 11th May 2026 at 14:58
AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
