Research Object Crate for Somatic-ShortV @ NCI-Gadi

Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following [GATK's Best Practice Workflow](https://gatk.broadinstitute.org/hc/en-us/articles/360035894731-Somatic-short-variant-discovery-SNVs-Indels-). This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel. Infrastructure\_deployment\_metadata: Gadi (NCI)

Author

Tracy Chew, Rosemarie Sadsad, Cali Willet

License

GPL-3.0

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