/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Nextflow config file for running full-size tests
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Defines input files and everything required to run a full size pipeline test.

    Use as follows:
        nextflow run nf-core/multiplesequencealign -profile test_full,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name        = 'Full test profile'
    config_profile_description = 'Full test dataset to check pipeline function'

    skip_stats      = false
    calc_sim        = true
    calc_seq_stats  = true
    extract_plddt   = true
    skip_eval       = false
    calc_sp         = true
    calc_tc         = true
    calc_irmsd      = true
    calc_gaps       = true
    calc_tcs        = true
    build_consensus = true

    // Input data for full size test
    input = params.pipelines_testdata_base_path + 'multiplesequencealign/samplesheet/v1.0/samplesheet_test_af2.csv'
    tools = params.pipelines_testdata_base_path + 'multiplesequencealign/toolsheet/v1.0/toolsheet_small.csv'
}
