/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 *   nextflow run nf-core/nanoseq -profile test_nobc_nodx_vc,<docker/singularity>
 */

params {
    config_profile_name        = 'Test profile'
    config_profile_description = 'Minimal test dataset to check variant calling functions'

    // Limit resources so that this can run on Travis
    max_cpus            = 2
    max_memory          = 6.GB
    max_time            = 12.h

    // Input data to skip basecalling and demultiplexing, and variant call
    input               = 'https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/3.0/samplesheet/samplesheet_nobc_nodx_vc.csv'
    protocol            = 'DNA'
    skip_basecalling    = true
    skip_quantification = true
    skip_demultiplexing = true
    call_variants       = true

    variant_caller      = 'medaka'
    structural_variant_caller = 'sniffles'
}
