name: pycoqc
description: write your description here
keywords:
  - qc
  - quality control
  - sequencing
  - nanopore
tools:
  - pycoqc:
      description: PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
      homepage: https://github.com/tleonardi/pycoQC
      documentation: https://tleonardi.github.io/pycoQC/
      tool_dev_url: https://github.com/tleonardi/pycoQC
      doi: "10.21105/joss.01236"
      licence: ["GNU General Public v3 (GPL v3)"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - summary:
      type: file
      description: sequencing summary file
      pattern: "*.{txt}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - html:
      type: file
      description: Results in HTML format
  - json:
      type: file
      description: Results in JSON format
      pattern: "*.{json}"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"

authors:
  - "@joseespinosa"
  - "@drpatelh"
