4 items tagged with 'BGE'.
Barcode gene Extraction and Evaluation from Genome Skims (BeeGees) Snakemake workflow
Snakemake workflow for recovering high-quality barcode sequences at scale, built around MitoGeneExtractor and adapted for genome skims of museum specimens.
Contents
Stable
skim2mito
skim2mito is a snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from low coverage genome skims. The pipeline was designed to work with sequence data from museum collections. However, it should also work with genome skims from recently collected samples.
Contents
- Setup
- Example data
- Input
- Output
- Filtering contaminants
- [Assembly and ...
Stable
