POLY_PIPELINE

A data analysis pipeline for STOmics data tailored to polyploid organisms.

Contributing

Contributions are welcome! Please fork the repository and submit a pull request. See the CONTRIBUTING.md for details.

Main Pipeline (Cluster Execution)

The core scripts are optimized for SGE and PBS clusters execution. They use relative paths and must be run from the POLY_PIPELINE main directory.

Data Input

The input file must be the ...

RNASeq-DE @ NCI-Gadi processes RNA sequencing data (single, paired and/or multiplexed) for differential expression (raw FASTQ to counts). This pipeline consists of multiple stages and is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes to run each stage in parallel.

Infrastructure_deployment_metadata: Gadi (NCI)