Teams

Here we introduce a scientific workflow implementing several open-source software executed by Parsl parallel scripting language in an high-performance computing environment. We have applied the workflow to a single-cardiomyocyte RNA-seq data retrieved from Gene Expression Omnibus database. The workflow allows for the analysis (alignment, QC, sort and count reads, statistics generation) of raw RNA-seq data and seamless integration of differential expression results into a configurable script code. ...

Personalized Medicine Center of Excellence

PiFlow is an open source, ready-to-use workflow management systems. It has won 2023 TOP 100 Open Source Achievement Award by BenchCouncil, and its latest version was released in October 2024. PiFlow is dedicated to helping both data scientists and non-technical users to solve complex tasks by providing out-of-the-box solutions.

It focuses on the construction of DigitalTwins for the prototyping of complex manufactured objects integrating state-of-the-art adaptive solvers with machine learning and data-mining, contributing to the Industry 4.0 vision.

It develops innovative adaptive workflows for climate and for the study of Tropical Cyclones (TC) in the context of the CMIP6 experiment, including in-situ analytics.