Teams

Collection of workflows and tools to facilitate the assembly of (Italian) SARS-CoV-2 genomes and deposition of relevant data in INDSC sequence databases

Janis is an open-source Python framework that aims to address the portability and interoperability problems between workflow specifications, by abstracting both the workflow and execution model in order to generate CWL, WDL or Nextflow workflows.

Funding sources:

• Institutional financial support for software engineering and academic contributions from Peter Mac and Melbourne Bioinformatics
• Richard Lupat was supported by a grant from the Peter Mac Foundation
• Bernard Pope was supported by a ...

Kataegis refers to the occurrence of regional hypermutation and is a phenomenon observed in a wide range of malignancies. Using changepoint detection katdetectr aims to identify putative kataegis foci from common data-formats housing genomic variants. Katdetectr has shown to be a robust package for the detection, characterization and visualization of kataegis.