nf-synteny

A simple pipeline to run a macro synteny analysis.

It is under development, so if you wish to use the pipeline for your own research, please contact us (ecoflow.ucl [at] gmail.com). We can give you the up to date detail for the methods and the up to date figures. When it is published we will release a final version.

Synteny is the study of chromosome arrangement and gene order. Over evolutionary time, two species diverge from the state of the common ancestor, due to a variety of ...

nf-synteny

A simple pipeline to run a macro synteny analysis.

It is under development, so if you wish to use the pipeline for your own research, please contact us (ecoflow.ucl [at] gmail.com). We can give you the up to date detail for the methods and the up to date figures. When it is published we will release a final version.

Synteny is the study of chromosome arrangement and gene order. Over evolutionary time, two species diverge from the state of the common ancestor, due to a variety of ...

nf-synteny

A simple pipeline to run a macro synteny analysis.

It is under development, so if you wish to use the pipeline for your own research, please contact us (ecoflow.ucl [at] gmail.com). We can give you the up to date detail for the methods and the up to date figures. When it is published we will release a final version.

Synteny is the study of chromosome arrangement and gene order. Over evolutionary time, two species diverge from the state of the common ancestor, due to a variety of ...

EXCON (v2.3.1)

A Nextflow pipeline for gene family EXpansion and CONtraction analysis across multiple species using CAFE5.

Given a set of genome assemblies and annotations, EXCON builds orthogroups with OrthoFinder, fits and compares multiple CAFE models to identify gene families evolving at significantly different rates, and automatically selects the best-fitting model for downstream analysis. Optionally, GO enrichment analysis can be run on expanded and contracted gene families, and ...