Workflows

Checking expected species and contamination in bacterial isolate

Associated Tutorial

This workflows is part of the tutorial Checking expected species and contamination in bacterial isolate, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Identification of AMR genes in an assembled bacterial genome

Associated Tutorial

This workflows is part of the tutorial Identification of AMR genes in an assembled bacterial genome, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Binning workflows that uses abundance information and performs binning of metagenomic contigs using 4 different binners as well as bin refinement.

Associated Tutorial

This workflows is part of the tutorial Binning of metagenomic sequencing data, available in the GTN

Features

• Includes [Galaxy Workflow ...

Associated Tutorial

This workflows is part of the tutorial Visualization of RNA-Seq results with heatmap2, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Workflow for the Galaxy Training Network tutorial "Hybrid genome assembly - Nanopore and Illumina"

Associated Tutorial

This workflows is part of the tutorial Hybrid genome assembly - Nanopore and Illumina, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Visualize and filter scATAC-seq anndata to produce a high quality count matrix

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell ATAC-seq Datasets, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

This workflow creates an count matrix anndata file given 10x scATAC-seq data.

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell ATAC-seq Datasets, available in the GTN

Features

• Includes Galaxy Workflow Tests ...