Workflows
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Query
Created At
Updated At
Tool
FastQC40
MultiQC30
anndata23
SAMtools23
ggplot216
Bowtie 215
Cutadapt15
fastp15
SCANPY15
BEDTools13
BWA13
JBrowse13
scikit-learn13
BUSCO12
Bandage11
mothur11
QUAST11
FreeBayes10
Minimap210
taxonomy_krona_chart10
BamTools9
DeepTools9
kraken29
Trimmomatic9
BCFtools8
BLAST8
Galaxy Image Analysis8
msConvert8
scikit-image8
seqtk8
STAR8
Trim Galore8
gffread7
HISAT27
MaxQuant7
NanoPlot7
DESeq26
MACS6
MuSiC Deconvolution6
Open Babel6
StringTie6
Biopython5
bx-python5
DropletUtils5
Falco5
FASTX-Toolkit5
FeatureCounts5
Flye5
GEMINI5
gffcompare5
RSeQC5
SRA Software Toolkit5
annotatemyids4
Galactic Circos4
GOseq4
KrakenTools4
MAFFT4
MEGAHIT4
MetaPhlAn4
pyGenomeTracks4
Salmon4
Stacks4
Unicycler4
Unipept4
UniProt4
bed to protein map3
Bracken3
Bwa-mem23
Cardinal3
Clustal 2 (Clustal W, Clustal X)3
COMBAT-TB Workbench3
customProDB3
GenomeScope 2.03
Gromacs3
humann3
InterProScan (EBI)3
Merqury3
MSstats3
MSstatsTMT3
Newick Utilities3
Prokka3
R3
Racon3
snippy3
UMI-tools3
Vcflib3
Bakta2
Bio3D2
biomformat2
BRAKER32
CellProfiler2
ChEMBL2
chemfp2
compute_sequence_length2
cshl_fastx_reverse_complement2
Diamond2
eggNOG-mapper v22
epiScanpy2
export2graphlan2
FastTree2
funannotate2
gfastats2
GOEnrichment2
GraPhlAn2
Helixer2
HiCExplorer2
HUMAnN22
The Immune Epitope Database (IEDB)2
limma2
lofreq2
MAKER2
MAPseq2
MDAnalysis2
Medaka2
MEME2
MetaNovo2
metaQuantome2
metaspades2
NCBI Resources2
NGSUtils2
OMArk2
OptiType2
The Protein Data Bank (PDB)2
PRINSEQ2
QIIME2
RDKit2
Recentrifuge2
RepeatMasker2
sceasy2
Seq2HLA2
SeqCode2
Seurat2
SnapATAC2
snpEff2
SortMeRNA2
staramr2
tb-profiler2
tbl2gff32
Workflow4Metabolomics2
xcms2
ABRicate1
AmberTools1
ampvis1
antiSMASH1
Apollo1
AUGUSTUS1
blockbuster1
Bowtie1
ChemicalToolbox1
ChIPpeakAnno1
ChiRA1
Circos1
Clair31
clusterProfiler1
cmsearch-deoverlap1
Combine Metaphlan and HUMAnN1
CoverM1
dada21
diaPASEF1
edgeR1
EGA1
EGSEA1
European Nucleotide Archive (ENA)1
ete1
ewastools1
FEELnc1
fgsea1
Filtlong1
FlashLFQ1
FREEC1
GAEVAL1
GECKO1
g:Profiler1
Heinz1
Infernal1
Integron Finder1
iqtree1
ISEScan1
IsoformSwitchAnalyzeR1
IWTomics1
kraken-biom1
Krona1
LASTZ1
lotus21
MAGeCK1
MALDIquant1
Matchms1
MethylDackel1
MFAssignR1
miniasm1
miRDeep21
multiGSEA1
mzToSQLite1
OBITools1
pangolin1
pathview1
Peakachu1
PfamScan1
phyloseq1
pilon1
PlasFlow1
PlasmidFinder1
Polypolish1
Prodigal1
Proteinortho1
PubMed1
purge_dups1
PyTorch1
QualiMap1
QuickTree1
RaceID1
RAMClustR1
RapidNJ1
RAxML1
RCAS1
RED1
RIAssigner1
rnaQUAST1
SALSA1
scater1
shovill1
sinto1
Smudgeplots1
SNAP1
SPAdes1
SuCOS1
Targetfinder.org1
TransDecoder1
TRANSIT1
trimAl1
Trinity1
Trinotate1
VarScan1
varVAMP1
VelvetOptimiser1
WoLF PSORT1
More...
Workflow type
Galaxy382
Tag
Galaxy382
GTN382
Transcriptomics30
Proteomics28
microbiome22
Ecology21
Assembly16
genome-annotation16
Statistics15
variant-analysis15
Name:neoantigen14
epigenetics12
imaging12
Name:microgalaxy12
Introduction11
name:single-cell11
Computational-chemistry10
Name:clinicalmp10
Name:singlecell10
single-cell10
Lg-wf9
Metagenomics9
Ml9
name:training9
Galaxy-interface8
Name:transcriptomics8
Sequence-analysis7
Amplicon6
Metabolomics6
Mgnify_amplicon6
Climate5
evolution5
name:Collection5
Name:iwc5
Name:pathogfair5
Ocean5
Earth-system4
Flexynesis4
Machine_learning4
Name:deconv-eval4
Name:scrna-seq4
Visualisation4
Cheminformatics3
Microgalaxy3
Name:by-covid3
Name:seurat3
Name:trajectory_analysis3
pangeo3
synthetic-biology3
bioimaging2
Braker32
BUSCO2
CellProfiler2
Classification2
Contributing2
Deep_learning2
Digitalhumanities2
GC-MS2
Genomeannotation2
Genomics2
Gleam2
hla2
Iedb2
imageanaylsis2
Jbrowse2
Marineomics2
scATAC-seq2
Segmentation2
textcleaning2
vgp2
yolo2
10X1
4culture1
AI1
annotation pipeline1
Argo1
Asaim1
Audio1
Augustus1
bgc1
Big-data1
binning1
Biodiversity1
Bioimage1
cancer1
Chinese-language1
Chowell_train_test1
Clustering1
Comparison1
copernicus1
culturedata1
Cut&run1
Deeplearning1
denovo1
Dh1
Diff1
Electrophoresis_gel1
Environmental monitoring1
eukaryotic genome1
Exposomics1
Expospomics1
Fnn1
Formulaassignment1
Fungi1
gene prediction1
GeneMark-ET1
Geosciences1
Habitat fragmentation1
Ham100001
hCNV1
Helixer1
Humanities1
IDR1
Image_classification1
Image_learner1
Imagerecognition1
Introductions1
Iwtomics1
Land cover classification1
Landscape ecology1
Llr6_model1
Logistic_regression_model1
Loris1
Lotus21
Ludwig1
Machine Learning1
Marinebiodiversity1
Metaplasmidome1
MIRACUM1
Mito-flash1
Mitochondrion_tracking1
Mnist1
Moleculardynamics1
Multi-omics1
Multimodal1
Name:bacsnp1
Name:baculoviridae1
Name:baculovirus1
Name:band_intensity1
Name:bioimaging1
Name:brightfieldmicroscopy1
Name:circos1
Name:colordeconvolution1
Name:data-management1
Name:deconvolution1
name:ERGA1
Name:fairymags1
Name:gtn1
Name:histology1
Name:histologystaining1
Name:immunohistochemistry1
Name:massontrichrome1
Name:naldv1
Name:nanopore1
Name:qupath1
Name:scanpy1
Name:sequenceanalysis1
Name:single_cell1
Name:viz1
NFDI4BIOIMAGE1
Noiseestimation1
OMERO1
openrefine1
pathogen1
Plant1
protein evidence1
Pseudobulk1
Pubmed1
Pubtator1
QCxMS1
RDM1
Recalibration1
referencegenome1
Regression1
Reviewed1
rna1
rna-seq1
Roi1
Sempi31
Sentinel-21
Skin_lesion1
Smfish1
Tabpfn1
tabulardata1
Text1
Text_mining1
Text-mining1
training1
transcription1
tuberculosis1
Vegetation1
Vegetation index1
VGP_curated1
Video1
visualization1
Voronoi1
Whisper1
More...
Submitter
GTN Bot382
Creator
Marie Jossé8
Anthony Bretaudeau6
Yvan Le Bras3
Romane Libouban3
Helena Rasche1
Alexandre Cormier1
Laura Leroi1
Eli Chadwick1
Patrick Austin1
More...
Operation annotations
Gene prediction1
Genome annotation1
Read mapping1
Sequence alignment1
Sequence assembly1
Scientific disciplines
Computer Science379
Maturity
Stable16
382
Workflows visible to you, out of a total of 382
atac-seq
Associated Tutorial
This workflows is part of the tutorial ATAC-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Remove contamination and host reads, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
This workflow performs taxonomic profiling of metagenomic data and visualizes microbial community composition using Kraken2 and Bracken as well as MetaPhlAn.
Associated Tutorial
This workflows is part of the tutorial Taxonomic Profiling and Visualization of Metagenomic Data, available in the GTN
Features
- Includes [Galaxy Workflow ...
Checking expected species and contamination in bacterial isolate
Associated Tutorial
This workflows is part of the tutorial Checking expected species and contamination in bacterial isolate, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Identification of AMR genes in an assembled bacterial genome
Associated Tutorial
This workflows is part of the tutorial Identification of AMR genes in an assembled bacterial genome, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Binning workflows that uses abundance information and performs binning of metagenomic contigs using 4 different binners as well as bin refinement.
Associated Tutorial
This workflows is part of the tutorial Binning of metagenomic sequencing data, available in the GTN
Features
- Includes [Galaxy Workflow ...
Associated Tutorial
This workflows is part of the tutorial Visualization of RNA-Seq results with heatmap2, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
